With covid-19 vaccine rollouts well underway the world over, the subject of clinical trials has been a focal point of discussion lately. Of course clinical trials are applicable to every drug, not just vaccines, and the class of molecules on which my own work focuses includes perhaps one of the most famous case studies of why clinical trials are necessary: thalidomide.
The teratogenic effects in unborn infants of this seemingly innocuous small molecule are well documented and infamous. But at the time of its initial use a treatment for morning sickness in the mid twentieth century, little was known about its mechanism of action. Only within the last 20 years has the molecular glue-type nature of thalidomide and its analogues (collectively known as immunomodulatory imide drugs, or IMIDs) become apparent. Armed with this knowledge, we know not only understand how thalidomide works in useful situations (such as curing cancer), but also how it exhibits its less desirable effects (recruiting SALL4 to the E3 ligase cereblon, leading to SALL4’s degradation and subsequent embryogenesis havoc).
Category Archives: Commentary
Do antibodies care about sex?
In a recent OPIG antibody meeting, the topic of immune system differences between men and women came up. I thought this was cool and something I hadn’t read about, so what a brilliant topic for a blog most. This post is a high-level overview – I’ve listed the papers I’ve used at the bottom of this post so please consult them for more details!
Differences between males and females can lead to pretty big disparities in disease prevalence and outcomes. For example, non-reproductive cancers occur predominantly in males, whilst the majority of autoimmune disease occurs in females. Many factors may be impacting this, including environmental, genetic and hormonal influences, and much more research is required to fully understand these processes. Here I focus on sex-based biology, rather than gender, though both can influence the immune response.
Continue reading6 things I’ve learnt in my first year as a PhD student
Despite spending only four weeks working in the department, this month roughy marks a year since I started my unlikely career as a statistician and was inaugurated into the hall of opiglets (if you account for my foray into the magic of quantum computing last summer). The past year has been filled with learning opportunities, some of which I ought to take note and others are probably worth forgetting. Nonetheless, here is a short list of things I’ve learned in my first year as a DPhil Student, which you may find helpful in what I hope are more precedented times.
Simple and stupid first
When it comes to deciding how to tackle your next scientific problem or which lesson to start your blog post with, often the simplest and sometimes most ‘stupid’ idea is the way to go. Keeping things simple gives you the time to better understand your question without getting lost in the details of a complex solution. Plus, the results will inform your later next steps.
Continue readingSlippery slopes and slippery flats
In this episode of my decade-long quest to correct popular British misconceptions, I wish to turn to one of my most geeky obsessions: trains. In particular, I would like to address a particularly British obsession, which many take as a signal of the lapse of British know-how from its mid-Empire industrial-revolution heights.
This is, of course, ‘leaves on the line‘. Why – demand the British public – must timetables run five to ten minutes slower when there are more leaves on the ground? Why do no other modern countries suffer from these ills? And why does the railway take no action over this commuting scourge?
Continue readingIWD 2021 and the Gender Pay Gap
Throughout the pandemic, the statistics on division of childcare and home-schooling responsibilities have been shocking: mothers are taking on 150% more homeschooling than fathers (1), while 71% of working mothers’ furlough applications were rejected (2). A third of working mothers reported having lost some or all work due to a lack of childcare during the pandemic, with this figure rising to 44% for BAME mothers. On top of this, 90% of the UK’s 2 million single parents are women (3). These unequal divisions are threatening to undo decades of progress towards gender equality.
In April 2019, the pay gap between men and women in the UK was 17.3% (4), and at the current rate of gender pay gap reduction, the gap will not be closed until 2052 (5). The causes of this gap continue to be unequal caring responsibilities, more women in low-paid work and (illegal) discrimination. BAME women are also subject to the ethnicity pay gap. While this varies regionally and by ethnicity, in London in 2018 the overall figure was 23% (6).
Continue readingCommercialising your research: Where to start?
If you look at some of the biggest technology companies in the world, from Google and Facebook to hardware companies like Dell or even biotech unicorns like Oxford’s own Oxford Nanopore, all of them started on university campuses. If you are a researcher interested in finding out how to make the first steps to commercialise your research here is a quick guide:
Continue readingThe Coronavirus Antibody Database: 10 months on, 10x the data!
Back in May 2020, we released the Coronavirus Antibody Database (‘CoV-AbDab’) to capture molecular information on existing coronavirus-binding antibodies, and to track what we anticipated would be a boon of data on antibodies able to bind SARS-CoV-2. At the time, we had found around 300 relevant antibody sequences and a handful of solved crystal structures, most of which were characterised shortly after the SARS-CoV epidemic of 2003. We had no idea just how many SARS-CoV-2 binding antibody sequences would come to be released into the public domain…
10 months later (2nd March 2021), we now have tracked 2,673 coronavirus-binding antibodies, ~95% with full Fv sequence information and ~5% with solved structures. These datapoints originate from 100s of independent studies reported in either the academic literature or patent filings.
Continue readingA new Graduate students (unexperienced) guide to academic literature.
Given this is my first ever attempt at a blog post, let alone one on such a highly regarded platform I feel it’s proper that I introduce myself. Hi, my name is Maranga, I am a second-year SABS student starting my DPhil project in Small molecules, and honestly, I really don’t like reading. Especially, scientific journals. Now I can appreciate this does not bode well given my chosen career path, however, my aversion for reading is not new (shoutout to Biff, Chip and Kipper) and hopefully not permanent.
Continue readingAntibody-protein binding and conformational changes
I came across a recent paper on the antibody-protein binding and conformational changes. As I work mainly on the binding site/Fv regions of antibodies, I am intrigued to see the role of the constant domains in the overall antibody function.
Continue readingHow COVID-19 affected my (undergrad) masters
The COVID-19 pandemic hit us all in different ways, and this is a short look into how it affected me, a biochemistry undergrad doing my masters project in OPIG.
The first thing that impacted me was the move to working from home. Now you might think that as the group does only computational work that our work might not be too affected by working from home, as all the servers etc. can be accessed remotely. To a certain extent, this is true, it is possible to work from home for starters. Things may well be right as rain for a few people, but it wasn’t for me. I think a lot of people are finding that things take longer when not in the office even under the best circumstances. Technology and equipment can also reduce your productivity quite majorly. Not having a very fast computer (mine is 5 years old and you can tell) or poor chairs that give you backache (living that wooden dining room chair life) are just examples of things that affect your productivity, and also not something most of can do about.
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